Title: The challenge of clustering flow cytometry data from phytoplankton in Lakes
Authors : Glüge, Stefan
Pomati, Francesco
Albert, Carlo
Kauf, Peter
Ott, Thomas
Proceedings: Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings
Pages : 379
Pages to: 386
Conference details: Nonlinear Dynamics of Electronic Systems, Communications in Computer and Information Science. 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014
Editors of the parent work: Mladenov, V.M.
Ivanov, P.C.
Publisher / Ed. Institution : Springer
Publisher / Ed. Institution: Cham
Issue Date: 2014
Series : Communications in Computer and Information Science
Series volume: 438
Language : Deutsch / German
Subjects : Phytoplankton; Flow Cytometry; Clustering; Sequential Superparamagnetic Clustering
Subject (DDC) : 004: Informatik
Abstract: ClusteringFlow cytometry (FC) devices count and measure cells in fluids in an automated procedure. In this paper we present our work in progress on the clustering of FC data. We compare standard clustering algorithms such as K-means, Ward’s clustering, etc., to the more advanced approach of sequential superparamagnetic clustering (SSC). We found Ward’s hierarchical clustering to perform best regarding internal cluster validation measures, while SSC yielded the best results based on the visual inspection of the clustering results.
Departement: Life Sciences und Facility Management
Organisational Unit: Institut für Angewandte Simulation (IAS)
Publication type: Konferenz: Paper / Conference Paper
Type of review: Keine Angabe / Not specified
DOI : 10.1007/978-3-319-08672-9_45
ISBN: 978-3-319-08671-2
ISSN: 1865-0929
URI: https://digitalcollection.zhaw.ch/handle/11475/4482
License (according to publishing contract) : Lizenz gemäss Verlagsvertrag / Licence according to publishing contract
Appears in Collections:Publikationen Life Sciences und Facility Management

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