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Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-26038
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dc.contributor.authorSulja, Arburon-
dc.contributor.authorPothier, Joël F.-
dc.contributor.authorBlom, Jochen-
dc.contributor.authorMoretti, Chiaraluce-
dc.contributor.authorBuonaurio, Roberto-
dc.contributor.authorRezzonico, Fabio-
dc.contributor.authorSmits, Theo H. M.-
dc.date.accessioned2022-11-11T13:18:10Z-
dc.date.available2022-11-11T13:18:10Z-
dc.date.issued2022-11-08-
dc.identifier.issn1471-2164de_CH
dc.identifier.urihttps://digitalcollection.zhaw.ch/handle/11475/26038-
dc.description.abstractPantoea agglomerans DAPP-PG 734 was isolated as endophyte from knots (tumors) caused by Pseudomonas savastanoi pv. savastanoi DAPP-PG 722 in olive trees. To understand the plant pathogen-endophyte interaction on a genomic level, the whole genome of P. agglomerans DAPP-PG 734 was sequenced and annotated. The complete genome had a total size of 5′396′424 bp, containing one circular chromosome and four large circular plasmids. The aim of this study was to identify genomic features that could play a potential role in the interaction between P. agglomerans DAPP-PG 734 and P. savastanoi pv. savastanoi DAPP-PG 722. For this purpose, a comparative genomic analysis between the genome of P. agglomerans DAPP-PG 734 and those of related Pantoea spp. was carried out. In P. agglomerans DAPP-PG 734, gene clusters for the synthesis of the Hrp-1 type III secretion system (T3SS), type VI secretion systems (T6SS) and autoinducer, which could play an important role in a plant-pathogenic community enhancing knot formation in olive trees, were identified. Additional gene clusters for the biosynthesis of two different antibiotics, namely dapdiamide E and antibiotic B025670, which were found in regions between integrative conjugative elements (ICE), were observed. The in-depth analysis of the whole genome suggested a characterization of the P. agglomerans DAPP-PG 734 isolate as endophytic bacterium with biocontrol activity rather than as a plant pathogen.de_CH
dc.language.isoende_CH
dc.publisherBioMed Centralde_CH
dc.relation.ispartofBMC Genomicsde_CH
dc.rightshttp://creativecommons.org/licenses/by/4.0/de_CH
dc.subjectGenomede_CH
dc.subjectBiocontrolde_CH
dc.subjectOlive knot diseasede_CH
dc.subjectAntibiotics biosynthesisde_CH
dc.subjectIntegrative conjugative elementde_CH
dc.subjectICEde_CH
dc.subjectSecretion systemde_CH
dc.subject.ddc572: Biochemiede_CH
dc.subject.ddc579: Mikrobiologiede_CH
dc.titleComparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734de_CH
dc.typeBeitrag in wissenschaftlicher Zeitschriftde_CH
dcterms.typeTextde_CH
zhaw.departementLife Sciences und Facility Managementde_CH
zhaw.organisationalunitInstitut für Umwelt und Natürliche Ressourcen (IUNR)de_CH
dc.identifier.doi10.1186/s12864-022-08966-yde_CH
dc.identifier.doi10.21256/zhaw-26038-
zhaw.funding.euNode_CH
zhaw.issue742de_CH
zhaw.originated.zhawYesde_CH
zhaw.publication.statuspublishedVersionde_CH
zhaw.volume23de_CH
zhaw.publication.reviewPeer review (Publikation)de_CH
zhaw.webfeedHigh Performance Computing (HPC)de_CH
zhaw.webfeedUmweltgenomikde_CH
zhaw.funding.zhawGenomik und Transkriptomik von Erwinia und Pantoeade_CH
zhaw.author.additionalNode_CH
zhaw.display.portraitYesde_CH
Appears in collections:Publikationen Life Sciences und Facility Management

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Sulja, A., Pothier, J. F., Blom, J., Moretti, C., Buonaurio, R., Rezzonico, F., & Smits, T. H. M. (2022). Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734. BMC Genomics, 23(742). https://doi.org/10.1186/s12864-022-08966-y
Sulja, A. et al. (2022) ‘Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734’, BMC Genomics, 23(742). Available at: https://doi.org/10.1186/s12864-022-08966-y.
A. Sulja et al., “Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734,” BMC Genomics, vol. 23, no. 742, Nov. 2022, doi: 10.1186/s12864-022-08966-y.
SULJA, Arburon, Joël F. POTHIER, Jochen BLOM, Chiaraluce MORETTI, Roberto BUONAURIO, Fabio REZZONICO und Theo H. M. SMITS, 2022. Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734. BMC Genomics. 8 November 2022. Bd. 23, Nr. 742. DOI 10.1186/s12864-022-08966-y
Sulja, Arburon, Joël F. Pothier, Jochen Blom, Chiaraluce Moretti, Roberto Buonaurio, Fabio Rezzonico, and Theo H. M. Smits. 2022. “Comparative Genomics to Examine the Endophytic Potential of Pantoea Agglomerans DAPP-PG 734.” BMC Genomics 23 (742). https://doi.org/10.1186/s12864-022-08966-y.
Sulja, Arburon, et al. “Comparative Genomics to Examine the Endophytic Potential of Pantoea Agglomerans DAPP-PG 734.” BMC Genomics, vol. 23, no. 742, Nov. 2022, https://doi.org/10.1186/s12864-022-08966-y.


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