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https://doi.org/10.21256/zhaw-26038| Publikationstyp: | Beitrag in wissenschaftlicher Zeitschrift |
| Art der Begutachtung: | Peer review (Publikation) |
| Titel: | Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734 |
| Autor/-in: | Sulja, Arburon Pothier, Joël F. Blom, Jochen Moretti, Chiaraluce Buonaurio, Roberto Rezzonico, Fabio Smits, Theo H. M. |
| et. al: | No |
| DOI: | 10.1186/s12864-022-08966-y 10.21256/zhaw-26038 |
| Erschienen in: | BMC Genomics |
| Band(Heft): | 23 |
| Heft: | 742 |
| Erscheinungsdatum: | 8-Nov-2022 |
| Verlag / Hrsg. Institution: | BioMed Central |
| ISSN: | 1471-2164 |
| Sprache: | Englisch |
| Schlagwörter: | Genome; Biocontrol; Olive knot disease; Antibiotics biosynthesis; Integrative conjugative element; ICE; Secretion system |
| Fachgebiet (DDC): | 572: Biochemie 579: Mikrobiologie |
| Zusammenfassung: | Pantoea agglomerans DAPP-PG 734 was isolated as endophyte from knots (tumors) caused by Pseudomonas savastanoi pv. savastanoi DAPP-PG 722 in olive trees. To understand the plant pathogen-endophyte interaction on a genomic level, the whole genome of P. agglomerans DAPP-PG 734 was sequenced and annotated. The complete genome had a total size of 5′396′424 bp, containing one circular chromosome and four large circular plasmids. The aim of this study was to identify genomic features that could play a potential role in the interaction between P. agglomerans DAPP-PG 734 and P. savastanoi pv. savastanoi DAPP-PG 722. For this purpose, a comparative genomic analysis between the genome of P. agglomerans DAPP-PG 734 and those of related Pantoea spp. was carried out. In P. agglomerans DAPP-PG 734, gene clusters for the synthesis of the Hrp-1 type III secretion system (T3SS), type VI secretion systems (T6SS) and autoinducer, which could play an important role in a plant-pathogenic community enhancing knot formation in olive trees, were identified. Additional gene clusters for the biosynthesis of two different antibiotics, namely dapdiamide E and antibiotic B025670, which were found in regions between integrative conjugative elements (ICE), were observed. The in-depth analysis of the whole genome suggested a characterization of the P. agglomerans DAPP-PG 734 isolate as endophytic bacterium with biocontrol activity rather than as a plant pathogen. |
| URI: | https://digitalcollection.zhaw.ch/handle/11475/26038 |
| Volltext Version: | Publizierte Version |
| Lizenz (gemäss Verlagsvertrag): | CC BY 4.0: Namensnennung 4.0 International |
| Departement: | Life Sciences und Facility Management |
| Organisationseinheit: | Institut für Umwelt und Natürliche Ressourcen (IUNR) |
| Publiziert im Rahmen des ZHAW-Projekts: | Genomik und Transkriptomik von Erwinia und Pantoea |
| Enthalten in den Sammlungen: | Publikationen Life Sciences und Facility Management |
Dateien zu dieser Ressource:
| Datei | Beschreibung | Größe | Format | |
|---|---|---|---|---|
| 2022_Sulja-etal_Endophytic-potential-Pantoea-agglomerans.pdf | Article | 5.35 MB | Adobe PDF |  Öffnen/Anzeigen |
| 2022_Sulja-etal_Endophytic-potential-Pantoea-agglomerans_Suppl.pdf | Supplementary Material | 2.21 MB | Adobe PDF |  Öffnen/Anzeigen |
Zur Langanzeige
Sulja, A., Pothier, J. F., Blom, J., Moretti, C., Buonaurio, R., Rezzonico, F., & Smits, T. H. M. (2022). Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734. BMC Genomics, 23(742). https://doi.org/10.1186/s12864-022-08966-y
Sulja, A. et al. (2022) ‘Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734’, BMC Genomics, 23(742). Available at: https://doi.org/10.1186/s12864-022-08966-y.
A. Sulja et al., “Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734,” BMC Genomics, vol. 23, no. 742, Nov. 2022, doi: 10.1186/s12864-022-08966-y.
SULJA, Arburon, Joël F. POTHIER, Jochen BLOM, Chiaraluce MORETTI, Roberto BUONAURIO, Fabio REZZONICO und Theo H. M. SMITS, 2022. Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734. BMC Genomics. 8 November 2022. Bd. 23, Nr. 742. DOI 10.1186/s12864-022-08966-y
Sulja, Arburon, Joël F. Pothier, Jochen Blom, Chiaraluce Moretti, Roberto Buonaurio, Fabio Rezzonico, and Theo H. M. Smits. 2022. “Comparative Genomics to Examine the Endophytic Potential of Pantoea Agglomerans DAPP-PG 734.” BMC Genomics 23 (742). https://doi.org/10.1186/s12864-022-08966-y.
Sulja, Arburon, et al. “Comparative Genomics to Examine the Endophytic Potential of Pantoea Agglomerans DAPP-PG 734.” BMC Genomics, vol. 23, no. 742, Nov. 2022, https://doi.org/10.1186/s12864-022-08966-y.
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