| Issue Date | Title | Involved Person(s) |
| 2018 | Progressive multiple sequence alignment with indel evolution | Maiolo, Massimo; Zhang, Xiaolei; Gil, Manuel; Anisimova, Maria |
| 2018 | Genomes reveal marked differences in the adaptive evolution between orangutan species | Mattle-Greminger, Maja P.; Bilgin Sonay, Tugce; Nater, Alexander; Pybus, Marc; Desai, Tariq, et al |
| 2018 | Genomic insights into evolution of AdpA family master regulators of morphological differentiation and secondary metabolism in streptomyces | Rabyk, Mariia; Yushchuk, Oleksandr; Rokytskyy, Ihor; Anisimova, Maria; Ostash, Bohdan |
| 28-Aug-2017 | Phylogenetics of tandem repeats with circular HMMs : a case study on Armadillo Repeat Proteins | Bliven, Spencer; Anisimova, Maria |
| 2017 | Phylogenetics reveals competition of human flu subtypes | Anisimova, Maria; Gatti, Lorenzo |
| 2017 | Progressive multiple sequence alignment with the Poisson Indel Process | Maiolo, Massimo; Zhang, Xiaolei; Gil, Manuel; Anisimova, Maria |
| 2016 | DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp. (Echinoidea) | Balakirev, Evgeniy S.; Anisimova, Maria; Pavlyuchkov, Vladimir A.; Ayala, Francisco J. |
| 2015 | TRAL : tandem repeat annotation library | Schaper, Elke; Korsunsky, Alexander; Pečerska, Jūlija; Messina, Antonio; Murri, Riccardo, et al |
| 2015 | Maximum-likelihood tree estimation using codon substitution models with multiple partitions | Zoller, Stefan; Boskova, Veronika; Anisimova, Maria |
| 2015 | Statistical approaches to detecting and analyzing tandem repeats in genomic sequences | Anisimova, Maria; Pečerska, Jūlija; Schaper, Elke |
| 2014 | Natural selection at coding and non-coding DNA mainly affects pathogenicity-related genes in the hemibiotrophic fungus Colletotrichum graminicola | Rech, Gabriel E.; Sanz-Martín, José M.; Anisimova, Maria; Sukno, Serenella A.; Thon, Michael R. |
| 2014 | Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families | Dimitrieva, Slavica; Anisimova, Maria |
| 2014 | Deep conservation of human protein tandem repeats within the eukaryotes | Schaper, Elke; Gascuel, Olivier; Anisimova, Maria |
| 2014 | Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences | Mirsky, Alexander; Anisimova, Maria; Kazandjian, Linda |
| 2014 | Joint alignmnet and phylogeny for large genomics data | Anisimova, Maria |
