Publikationstyp: Konferenz: Poster
Art der Begutachtung: Peer review (Publikation)
Titel: Molql : towards a common general purpose molecular query language
Autor/-in: Rose, Alexander S.
Sehnal, David
Bliven, Spencer
Burley, Stephen K.
Velankar, Sameer
et. al: No
DOI: 10.1016/j.bpj.2017.11.1910
Erschienen in: Biophysical Journal
Band(Heft): 114
Heft: 3, Supplement 1
Seite(n): 342a
Angaben zur Konferenz: 62nd Annual Meeting of the Biophysical Society, San Francisco, USA, 17-21 February 2018
Erscheinungsdatum: 2018
Verlag / Hrsg. Institution: Cell Press
ISSN: 0006-3495
1542-0086
Sprache: Englisch
Schlagwörter: Bioinformatics; Molecular query language
Fachgebiet (DDC): 005: Computerprogrammierung, Programme und Daten
Zusammenfassung: Advances in experimental techniques are providing access to ever more complex and larger macromolecular data sets. Definition and extraction of substructures represents a crucial step required for both analysis and visualization of these data. A common language for defining macromolecular substructures would streamline this step, and enable communication among different computational and visualization tools. However, software tools usually define their own query language or support a language that is not sufficiently general to describe complex spatial and other relationships within macromolecular structures. Herein, we introduce the Molecular Query Language (MolQL), a declarative language for describing substructures within molecular data. The design of the language has three main goals: 1) Make it easy for tool developers to implement the specification; 2) Be expressive enough to describe a wide range of molecular substructures; and 3) Be readily extensible. We describe the initial specification of the language, and provide its reference implementation that can execute MolQL expressions on any Protein Data Bank archival entry (pdb.org) and immediately show the result in a web browser. Moreover, we demonstrate the versatility of the language by translating Jmol, PyMOL, and VMD selection expressions into MolQL. Find out more about MolQL and try it online at http://molql.org/.
URI: https://digitalcollection.zhaw.ch/handle/11475/25613
Volltext Version: Publizierte Version
Lizenz (gemäss Verlagsvertrag): Lizenz gemäss Verlagsvertrag
Departement: Life Sciences und Facility Management
Organisationseinheit: Institut für Computational Life Sciences (ICLS)
Enthalten in den Sammlungen:Publikationen Life Sciences und Facility Management

Dateien zu dieser Ressource:
Es gibt keine Dateien zu dieser Ressource.
Zur Langanzeige
Rose, A. S., Sehnal, D., Bliven, S., Burley, S. K., & Velankar, S. (2018). Molql : towards a common general purpose molecular query language [Conference poster]. Biophysical Journal, 114(3, Supplement 1), 342a. https://doi.org/10.1016/j.bpj.2017.11.1910
Rose, A.S. et al. (2018) ‘Molql : towards a common general purpose molecular query language’, in Biophysical Journal. Cell Press, p. 342a. Available at: https://doi.org/10.1016/j.bpj.2017.11.1910.
A. S. Rose, D. Sehnal, S. Bliven, S. K. Burley, and S. Velankar, “Molql : towards a common general purpose molecular query language,” in Biophysical Journal, 2018, vol. 114, no. 3, Supplement 1, p. 342a. doi: 10.1016/j.bpj.2017.11.1910.
ROSE, Alexander S., David SEHNAL, Spencer BLIVEN, Stephen K. BURLEY und Sameer VELANKAR, 2018. Molql : towards a common general purpose molecular query language. In: Biophysical Journal. Conference poster. Cell Press. 2018. S. 342a
Rose, Alexander S., David Sehnal, Spencer Bliven, Stephen K. Burley, and Sameer Velankar. 2018. “Molql : Towards a Common General Purpose Molecular Query Language.” Conference poster. In Biophysical Journal, 114:342a. Cell Press. https://doi.org/10.1016/j.bpj.2017.11.1910.
Rose, Alexander S., et al. “Molql : Towards a Common General Purpose Molecular Query Language.” Biophysical Journal, vol. 114, no. 3, Supplement 1, Cell Press, 2018, p. 342a, https://doi.org/10.1016/j.bpj.2017.11.1910.


Alle Ressourcen in diesem Repository sind urheberrechtlich geschützt, soweit nicht anderweitig angezeigt.