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https://doi.org/10.21256/zhaw-22169| Publikationstyp: | Beitrag in wissenschaftlicher Zeitschrift |
| Art der Begutachtung: | Peer review (Publikation) |
| Titel: | Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree |
| Autor/-in: | Fernandes, Camila Martins, Leonor Teixeira, Miguel Blom, Jochen Pothier, Joël Fonseca, Nuno A. Tavares, Fernando |
| et. al: | No |
| DOI: | 10.3390/microorganisms9030624 10.21256/zhaw-22169 |
| Erschienen in: | Microorganisms |
| Band(Heft): | 9 |
| Heft: | 3 |
| Seite(n): | 624 |
| Erscheinungsdatum: | 17-Mär-2021 |
| Verlag / Hrsg. Institution: | MDPI |
| ISSN: | 2076-2607 |
| Sprache: | Englisch |
| Schlagwörter: | Walnut bacterial blight; Comparative genomics; Xanthomonas arboricola pv. juglandis; Xanthomonas euroxanthea; Pathogenicity |
| Fachgebiet (DDC): | 572: Biochemie 579: Mikrobiologie |
| Zusammenfassung: | The recent report of distinct Xanthomonas lineages of Xanthomonas arboricola pv. juglandis and Xanthomonas euroxanthea within the same walnut tree revealed that this consortium of walnut-associated Xanthomonas includes both pathogenic and nonpathogenic strains. As the implications of this co-colonization are still poorly understood, in order to unveil niche-specific adaptations, the genomes of three X. euroxanthea strains (CPBF 367, CPBF 424T, and CPBF 426) and of an X. arboricola pv. juglandis strain (CPBF 427) isolated from a single walnut tree in Loures (Portugal) were sequenced with two different technologies, Illumina and Nanopore, to provide consistent single scaffold chromosomal sequences. General genomic features showed that CPBF 427 has a genome similar to other X. arboricola pv. juglandis strains, regarding its size, number, and content of CDSs, while X. euroxanthea strains show a reduction regarding these features comparatively to X. arboricola pv. juglandis strains. Whole genome comparisons revealed remarkable genomic differences between X. arboricola pv. juglandis and X. euroxanthea strains, which translates into different pathogenicity and virulence features, namely regarding type 3 secretion system and its effectors and other secretory systems, chemotaxis-related proteins, and extracellular enzymes. Altogether, the distinct genomic repertoire of X. euroxanthea may be particularly useful to address pathogenicity emergence and evolution in walnut-associated Xanthomonas. |
| URI: | https://digitalcollection.zhaw.ch/handle/11475/22169 |
| Volltext Version: | Publizierte Version |
| Lizenz (gemäss Verlagsvertrag): | CC BY 4.0: Namensnennung 4.0 International |
| Departement: | Life Sciences und Facility Management |
| Organisationseinheit: | Institut für Umwelt und Natürliche Ressourcen (IUNR) |
| Publiziert im Rahmen des ZHAW-Projekts: | Xhortomics: Entwicklung von diagnostischen und epidemiologischen Hilfsmitteln für die Xanthomonas hortorum Spezies Gruppe basierend auf OMICs Technologien Comparative genomics of the plant pathogen Xanthomonas arboricola pv. pruni and related xanthomonads |
| Enthalten in den Sammlungen: | Publikationen Life Sciences und Facility Management |
Dateien zu dieser Ressource:
| Datei | Beschreibung | Größe | Format | |
|---|---|---|---|---|
| Supplementar material_proof.pdf | Supplementary Material | 7.17 MB | Adobe PDF |  Öffnen/Anzeigen |
| Table S2_Fernandes et al, 2021 MDPI_proof.xlsx | Supplementary Table S2 | 22.39 kB | Microsoft Excel XML | Öffnen/Anzeigen |
| Table S3_ Best BLAST hit results putative homologs_proof.tsv | Supplementary Table S3 | 436.04 kB | Unknown | Öffnen/Anzeigen |
| 2021_Fernandes_Comparative_Genomics_Microorganisms.pdf | Main Text | 1.47 MB | Adobe PDF |  Öffnen/Anzeigen |
Zur Langanzeige
Fernandes, C., Martins, L., Teixeira, M., Blom, J., Pothier, J., Fonseca, N. A., & Tavares, F. (2021). Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree. Microorganisms, 9(3), 624. https://doi.org/10.3390/microorganisms9030624
Fernandes, C. et al. (2021) ‘Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree’, Microorganisms, 9(3), p. 624. Available at: https://doi.org/10.3390/microorganisms9030624.
C. Fernandes et al., “Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree,” Microorganisms, vol. 9, no. 3, p. 624, Mar. 2021, doi: 10.3390/microorganisms9030624.
FERNANDES, Camila, Leonor MARTINS, Miguel TEIXEIRA, Jochen BLOM, Joël POTHIER, Nuno A. FONSECA und Fernando TAVARES, 2021. Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree. Microorganisms. 17 März 2021. Bd. 9, Nr. 3, S. 624. DOI 10.3390/microorganisms9030624
Fernandes, Camila, Leonor Martins, Miguel Teixeira, Jochen Blom, Joël Pothier, Nuno A. Fonseca, and Fernando Tavares. 2021. “Comparative Genomics of Xanthomonas Euroxanthea and Xanthomonas Arboricola Pv. Juglandis Strains Isolated from a Single Walnut Host Tree.” Microorganisms 9 (3): 624. https://doi.org/10.3390/microorganisms9030624.
Fernandes, Camila, et al. “Comparative Genomics of Xanthomonas Euroxanthea and Xanthomonas Arboricola Pv. Juglandis Strains Isolated from a Single Walnut Host Tree.” Microorganisms, vol. 9, no. 3, Mar. 2021, p. 624, https://doi.org/10.3390/microorganisms9030624.
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