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https://doi.org/10.21256/zhaw-2008| Publikationstyp: | Beitrag in wissenschaftlicher Zeitschrift |
| Art der Begutachtung: | Peer review (Publikation) |
| Titel: | Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno |
| Autor/-in: | Luedin, Samuel M. Pothier, Joël F. Danza, Francesco Storelli, Nicola Frigaard, Niels-Ulrik Wittwer, Matthias Tonolla, Mauro |
| DOI: | 10.21256/zhaw-2008 10.1186/s40793-018-0317-z |
| Erschienen in: | Standards in Genomic Sciences |
| Band(Heft): | 13 |
| Heft: | 14 |
| Erscheinungsdatum: | 2018 |
| Verlag / Hrsg. Institution: | BioMed Central |
| ISSN: | 1944-3277 |
| Sprache: | Englisch |
| Schlagwörter: | CRISPR; Chromatiaceae; Meromictic lake; Okenone; Phototrophic sulfur bacteria; Sulfur cycling |
| Fachgebiet (DDC): | 572: Biochemie |
| Zusammenfassung: | "Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno. |
| URI: | https://digitalcollection.zhaw.ch/handle/11475/6991 |
| Volltext Version: | Publizierte Version |
| Lizenz (gemäss Verlagsvertrag): | CC BY 4.0: Namensnennung 4.0 International |
| Departement: | Life Sciences und Facility Management |
| Organisationseinheit: | Institut für Umwelt und Natürliche Ressourcen (IUNR) |
| Publiziert im Rahmen des ZHAW-Projekts: | High-throughput proteomics of Thiodictyon synthrophicum strain Cad16T |
| Enthalten in den Sammlungen: | Publikationen Life Sciences und Facility Management |
Dateien zu dieser Ressource:
| Datei | Beschreibung | Größe | Format | |
|---|---|---|---|---|
| Luedin2018.pdf | 2.6 MB | Adobe PDF |  Öffnen/Anzeigen |
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Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, N.-U., Wittwer, M., & Tonolla, M. (2018). Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences, 13(14). https://doi.org/10.21256/zhaw-2008
Luedin, S.M. et al. (2018) ‘Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno’, Standards in Genomic Sciences, 13(14). Available at: https://doi.org/10.21256/zhaw-2008.
S. M. Luedin et al., “Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno,” Standards in Genomic Sciences, vol. 13, no. 14, 2018, doi: 10.21256/zhaw-2008.
LUEDIN, Samuel M., Joël F. POTHIER, Francesco DANZA, Nicola STORELLI, Niels-Ulrik FRIGAARD, Matthias WITTWER und Mauro TONOLLA, 2018. Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences. 2018. Bd. 13, Nr. 14. DOI 10.21256/zhaw-2008
Luedin, Samuel M., Joël F. Pothier, Francesco Danza, Nicola Storelli, Niels-Ulrik Frigaard, Matthias Wittwer, and Mauro Tonolla. 2018. “Complete Genome Sequence of “Thiodictyon Syntrophicum” Sp. Nov. Strain Cad16T, a Photolithoautotrophic Purple Sulfur Bacterium Isolated from the Alpine Meromictic Lake Cadagno.” Standards in Genomic Sciences 13 (14). https://doi.org/10.21256/zhaw-2008.
Luedin, Samuel M., et al. “Complete Genome Sequence of “Thiodictyon Syntrophicum” Sp. Nov. Strain Cad16T, a Photolithoautotrophic Purple Sulfur Bacterium Isolated from the Alpine Meromictic Lake Cadagno.” Standards in Genomic Sciences, vol. 13, no. 14, 2018, https://doi.org/10.21256/zhaw-2008.
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