| Publication type: | Conference paper |
| Type of review: | Peer review (abstract) |
| Title: | The challenge of clustering flow cytometry data from phytoplankton in Lakes |
| Authors: | Glüge, Stefan Pomati, Francesco Albert, Carlo Kauf, Peter Ott, Thomas |
| DOI: | 10.1007/978-3-319-08672-9_45 |
| Proceedings: | Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings |
| Editors of the parent work: | Mladenov, V.M. Ivanov, P.C. |
| Page(s): | 379 |
| Pages to: | 386 |
| Conference details: | NDES 2014, 22nd Nonlinear Dynamics of Electronic Systems Conference, Albena, Bulgaria, 4-6 July 2014 |
| Issue Date: | 2014 |
| Series: | Communications in Computer and Information Science |
| Series volume: | 438 |
| Publisher / Ed. Institution: | Springer |
| Publisher / Ed. Institution: | Cham |
| ISBN: | 978-3-319-08671-2 |
| ISSN: | 1865-0929 |
| Language: | German |
| Subjects: | Phytoplankton; Flow Cytometry; Clustering; Sequential Superparamagnetic Clustering |
| Subject (DDC): | 004: Computer science |
| Abstract: | ClusteringFlow cytometry (FC) devices count and measure cells in fluids in an automated procedure. In this paper we present our work in progress on the clustering of FC data. We compare standard clustering algorithms such as K-means, Ward’s clustering, etc., to the more advanced approach of sequential superparamagnetic clustering (SSC). We found Ward’s hierarchical clustering to perform best regarding internal cluster validation measures, while SSC yielded the best results based on the visual inspection of the clustering results. |
| URI: | https://digitalcollection.zhaw.ch/handle/11475/4482 |
| Fulltext version: | Published version |
| License (according to publishing contract): | Licence according to publishing contract |
| Departement: | Life Sciences and Facility Management |
| Organisational Unit: | Institute of Computational Life Sciences (ICLS) |
| Appears in collections: | Publikationen Life Sciences und Facility Management |
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Glüge, S., Pomati, F., Albert, C., Kauf, P., & Ott, T. (2014). The challenge of clustering flow cytometry data from phytoplankton in Lakes [Conference paper]. In V. M. Mladenov & P. C. Ivanov (eds.), Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings (pp. 379–386). Springer. https://doi.org/10.1007/978-3-319-08672-9_45
Glüge, S. et al. (2014) ‘The challenge of clustering flow cytometry data from phytoplankton in Lakes’, in V.M. Mladenov and P.C. Ivanov (eds) Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings. Cham: Springer, pp. 379–386. Available at: https://doi.org/10.1007/978-3-319-08672-9_45.
S. Glüge, F. Pomati, C. Albert, P. Kauf, and T. Ott, “The challenge of clustering flow cytometry data from phytoplankton in Lakes,” in Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings, 2014, pp. 379–386. doi: 10.1007/978-3-319-08672-9_45.
GLÜGE, Stefan, Francesco POMATI, Carlo ALBERT, Peter KAUF und Thomas OTT, 2014. The challenge of clustering flow cytometry data from phytoplankton in Lakes. In: V.M. MLADENOV und P.C. IVANOV (Hrsg.), Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings. Conference paper. Cham: Springer. 2014. S. 379–386. ISBN 978-3-319-08671-2
Glüge, Stefan, Francesco Pomati, Carlo Albert, Peter Kauf, and Thomas Ott. 2014. “The challenge of clustering flow cytometry data from phytoplankton in Lakes.” Conference paper. In Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings, edited by V.M. Mladenov and P.C. Ivanov, 379–86. Cham: Springer. https://doi.org/10.1007/978-3-319-08672-9_45.
Glüge, Stefan, et al. “The challenge of clustering flow cytometry data from phytoplankton in Lakes.” Nonlinear Dynamics of Electronic Systems 22nd International Conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings, edited by V.M. Mladenov and P.C. Ivanov, Springer, 2014, pp. 379–86, https://doi.org/10.1007/978-3-319-08672-9_45.
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