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Publikationstyp: Beitrag in wissenschaftlicher Zeitschrift
Art der Begutachtung: Peer review (Publikation)
Titel: The MATCHIT automaton : exploiting compartmentalization for the synthesis of branched polymers
Autor/-in: Weyland, Mathias S.
Fellermann, Harold
Hadorn, Maik
Sorek, Daniel
Lancet, Doron
Rasmussen, Steen
Füchslin, Rudolf Marcel
DOI: 10.21256/zhaw-1661
10.1155/2013/467428
Erschienen in: Computational and Mathematical Methods in Medicine
Band(Heft): 2013
Heft: 467428
Erscheinungsdatum: 2013
Verlag / Hrsg. Institution: Hindawi
ISSN: 1748-670X
1748-6718
Sprache: Englisch
Fachgebiet (DDC): 005: Computerprogrammierung, Programme und Daten
540: Chemie
Zusammenfassung: We propose an automaton, a theoretical framework that demonstrates how to improve the yield of the synthesis of branched chemical polymer reactions. This is achieved by separating substeps of the path of synthesis into compartments. We use chemical containers (chemtainers) to carry the substances through a sequence of fixed successive compartments. We describe the automaton in mathematical terms and show how it can be configured automatically in order to synthesize a given branched polymer target. The algorithm we present finds an optimal path of synthesis in linear time. We discuss how the automaton models compartmentalized structures found in cells, such as the endoplasmic reticulum and the Golgi apparatus, and we show how this compartmentalization can be exploited for the synthesis of branched polymers such as oligosaccharides. Lastly, we show examples of artificial branched polymers and discuss how the automaton can be configured to synthesize them with maximal yield.
URI: https://digitalcollection.zhaw.ch/handle/11475/2801
Volltext Version: Publizierte Version
Lizenz (gemäss Verlagsvertrag): CC BY 3.0: Namensnennung 3.0 Unported
Departement: School of Engineering
Organisationseinheit: Institut für Angewandte Mathematik und Physik (IAMP)
Enthalten in den Sammlungen:Publikationen School of Engineering

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Weyland, M. S., Fellermann, H., Hadorn, M., Sorek, D., Lancet, D., Rasmussen, S., & Füchslin, R. M. (2013). The MATCHIT automaton : exploiting compartmentalization for the synthesis of branched polymers. Computational and Mathematical Methods in Medicine, 2013(467428). https://doi.org/10.21256/zhaw-1661
Weyland, M.S. et al. (2013) ‘The MATCHIT automaton : exploiting compartmentalization for the synthesis of branched polymers’, Computational and Mathematical Methods in Medicine, 2013(467428). Available at: https://doi.org/10.21256/zhaw-1661.
M. S. Weyland et al., “The MATCHIT automaton : exploiting compartmentalization for the synthesis of branched polymers,” Computational and Mathematical Methods in Medicine, vol. 2013, no. 467428, 2013, doi: 10.21256/zhaw-1661.
WEYLAND, Mathias S., Harold FELLERMANN, Maik HADORN, Daniel SOREK, Doron LANCET, Steen RASMUSSEN und Rudolf Marcel FÜCHSLIN, 2013. The MATCHIT automaton : exploiting compartmentalization for the synthesis of branched polymers. Computational and Mathematical Methods in Medicine. 2013. Bd. 2013, Nr. 467428. DOI 10.21256/zhaw-1661
Weyland, Mathias S., Harold Fellermann, Maik Hadorn, Daniel Sorek, Doron Lancet, Steen Rasmussen, and Rudolf Marcel Füchslin. 2013. “The MATCHIT Automaton : Exploiting Compartmentalization for the Synthesis of Branched Polymers.” Computational and Mathematical Methods in Medicine 2013 (467428). https://doi.org/10.21256/zhaw-1661.
Weyland, Mathias S., et al. “The MATCHIT Automaton : Exploiting Compartmentalization for the Synthesis of Branched Polymers.” Computational and Mathematical Methods in Medicine, vol. 2013, no. 467428, 2013, https://doi.org/10.21256/zhaw-1661.


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