Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-25178
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dc.contributor.authorDia, Nay C.-
dc.contributor.authorCottyn, Bart-
dc.contributor.authorBlom, Jochen-
dc.contributor.authorSmits, Theo H. M.-
dc.contributor.authorPothier, Joël F.-
dc.date.accessioned2022-06-24T14:04:36Z-
dc.date.available2022-06-24T14:04:36Z-
dc.date.issued2022-06-01-
dc.identifier.issn2673-3218de_CH
dc.identifier.urihttps://digitalcollection.zhaw.ch/handle/11475/25178-
dc.descriptionRelated publications: https://doi.org/10.1099/ijsem.0.005163, https://doi.org/10.1002/ndr2.12008de_CH
dc.description.abstractThe seven pathovars of Xanthomonas hortorum and Xanthomonas hydrangeae, referred to as the X. hortorum – X. hydrangeae species complex, cause disease on a multitude of plants, including crops, ornamental and wild plants. Cross-pathogenicity was proven for some of the strains within this species complex. It is thus important to have highly specific and fast diagnostics methods for members of the X. hortorum – X. hydrangeae species complex. A comparative genomic analysis was conducted for representative members within the complex to identify singletons for use as genomic targets for the assays. Seven loop-mediated isothermal amplification (LAMP) diagnostics assays were developed for the detection of six clades within the X. hortorum – X. hydrangeae species complex, in addition to one assay specific for the entire species complex. Primer sets were tested on a set of 62 reference strains. The primer sets amplified their respective targets within 15 minutes. Based on the reference set, all assays had a sensitivity, specificity, and efficiency of 100%. The assays were used on a validation set of 60 strains. According to the LAMP results, out of the 60 strains, 39 strains were assigned to one of the clades within the complex, 9 were assigned to the complex but to yet undefined clades within the complex, and 12 strains were previously misclassified as X. hortorum since their genomic DNA did not yield amplification with any of the assays. The seven genome-based assays are promising for use as diagnostic tools for various members within the X. hortorum – X. hydrangeae species complex, and for assigning new and historical isolates to this complex.de_CH
dc.language.isoende_CH
dc.publisherFrontiers Research Foundationde_CH
dc.relation.ispartofFrontiers in Agronomyde_CH
dc.rightshttp://creativecommons.org/licenses/by/4.0/de_CH
dc.subjectSingletonde_CH
dc.subjectBacterial leaf spotde_CH
dc.subjectDiagnostic methodde_CH
dc.subjectNatural infectionde_CH
dc.subjectHydrangeade_CH
dc.subject.ddc572: Biochemiede_CH
dc.subject.ddc579: Mikrobiologiede_CH
dc.titleDifferentiation of the Xanthomonas hortorum – Xanthomonas hydrangeae species complex using sensitive and selective LAMP assaysde_CH
dc.typeBeitrag in wissenschaftlicher Zeitschriftde_CH
dcterms.typeTextde_CH
zhaw.departementLife Sciences und Facility Managementde_CH
zhaw.organisationalunitInstitut für Umwelt und Natürliche Ressourcen (IUNR)de_CH
dc.identifier.doi10.3389/fagro.2022.898778de_CH
dc.identifier.doi10.21256/zhaw-25178-
zhaw.funding.euNode_CH
zhaw.issue898778de_CH
zhaw.originated.zhawYesde_CH
zhaw.publication.statuspublishedVersionde_CH
zhaw.volume4de_CH
zhaw.publication.reviewPeer review (Publikation)de_CH
zhaw.funding.snf177064de_CH
zhaw.webfeedHigh Performance Computing (HPC)de_CH
zhaw.webfeedUmweltgenomikde_CH
zhaw.funding.zhawXhortomics: Entwicklung von diagnostischen und epidemiologischen Hilfsmitteln für die Xanthomonas hortorum Spezies Gruppe basierend auf OMICs Technologiende_CH
zhaw.author.additionalNode_CH
zhaw.display.portraitYesde_CH
Appears in collections:Publikationen Life Sciences und Facility Management

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