Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation

Ruinelli, Michela; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.

doi:10.3389/fmicb.2022.804681

Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-24957

Full metadata record

DC Field	Value	Language
dc.contributor.author	Ruinelli, Michela	-
dc.contributor.author	Blom, Jochen	-
dc.contributor.author	Smits, Theo H. M.	-
dc.contributor.author	Pothier, Joël F.	-
dc.date.accessioned	2022-05-12T11:25:53Z	-
dc.date.available	2022-05-12T11:25:53Z	-
dc.date.issued	2022-05-03	-
dc.identifier.issn	1664-302X	de_CH
dc.identifier.uri	https://digitalcollection.zhaw.ch/handle/11475/24957	-
dc.description	Related publication: https://doi.org/10.1186/s12864-019-5555-y	de_CH
dc.description.abstract	Members of the Pseudomonas syringae species complex cause symptoms that are ranging from leaf spots to cankers on a multitude of plant species, including some of the genus Prunus. To date, a total of two species of the P. syringae species complex and six different pathovars have been associated with diseases on Prunus spp., which were shown to belong to different phylogenetic units (phylogroups, PG) based on sequence similarity of housekeeping genes or whole genomes, suggesting that virulence to Prunus spp. may be the result of convergent pathoadaptation. In this study, a comparative genomics approach was used to determine genes significantly associated with strains isolated from Prunus spp. across a phylogeny of 97 strains belonging to the P. syringae species complex. Our study revealed the presence of a set of orthologous proteins which were significantly associated with strains isolated from Prunus spp. than in strains isolated from other hosts or from non-agricultural environments. Among them, the type III effector HopAY predicted to encode for a C58 cysteine protease was found to be highly associated with strains isolated from Prunus spp. and revealed patterns supporting co-evolution and host adaptation.	de_CH
dc.language.iso	en	de_CH
dc.publisher	Frontiers Research Foundation	de_CH
dc.relation.ispartof	Frontiers in Microbiology	de_CH
dc.rights	http://creativecommons.org/licenses/by/4.0/	de_CH
dc.subject	Pseudomonas syringae species complex	de_CH
dc.subject	Comparative genomics	de_CH
dc.subject	Pathogenicity	de_CH
dc.subject	Co-evolution	de_CH
dc.subject	Host adaptation	de_CH
dc.subject.ddc	572: Biochemie	de_CH
dc.subject.ddc	579: Mikrobiologie	de_CH
dc.title	Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation	de_CH
dc.type	Beitrag in wissenschaftlicher Zeitschrift	de_CH
dcterms.type	Text	de_CH
zhaw.departement	Life Sciences und Facility Management	de_CH
zhaw.organisationalunit	Institut für Umwelt und Natürliche Ressourcen (IUNR)	de_CH
dc.identifier.doi	10.3389/fmicb.2022.804681	de_CH
dc.identifier.doi	10.21256/zhaw-24957	-
zhaw.funding.eu	info:eu-repo/grantAgreement/EC/FP7/613678//Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens/DROPSA	de_CH
zhaw.issue	804681	de_CH
zhaw.originated.zhaw	Yes	de_CH
zhaw.publication.status	publishedVersion	de_CH
zhaw.volume	13	de_CH
zhaw.publication.review	Open peer review	de_CH
zhaw.webfeed	Umweltgenomik	de_CH
zhaw.funding.zhaw	DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens	de_CH
zhaw.funding.zhaw	COST Action – Sustainable production of high quality cherries for the European market	de_CH
zhaw.author.additional	No	de_CH
zhaw.display.portrait	Yes	de_CH
zhaw.monitoring.costperiod	2022	de_CH
Appears in collections:	Publikationen Life Sciences und Facility Management

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Ruinelli, M., Blom, J., Smits, T. H. M., & Pothier, J. F. (2022). Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation. Frontiers in Microbiology, 13(804681). https://doi.org/10.3389/fmicb.2022.804681

Ruinelli, M. et al. (2022) ‘Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation’, Frontiers in Microbiology, 13(804681). Available at: https://doi.org/10.3389/fmicb.2022.804681.

M. Ruinelli, J. Blom, T. H. M. Smits, and J. F. Pothier, “Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation,” Frontiers in Microbiology, vol. 13, no. 804681, May 2022, doi: 10.3389/fmicb.2022.804681.

RUINELLI, Michela, Jochen BLOM, Theo H. M. SMITS und Joël F. POTHIER, 2022. Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation. Frontiers in Microbiology. 3 Mai 2022. Bd. 13, Nr. 804681. DOI 10.3389/fmicb.2022.804681

Ruinelli, Michela, Jochen Blom, Theo H. M. Smits, and Joël F. Pothier. 2022. “Comparative Genomics of Prunus-Associated Members of the Pseudomonas Syringae Species Complex Reveals Traits Supporting Co-Evolution and Host Adaptation.” Frontiers in Microbiology 13 (804681). https://doi.org/10.3389/fmicb.2022.804681.

Ruinelli, Michela, et al. “Comparative Genomics of Prunus-Associated Members of the Pseudomonas Syringae Species Complex Reveals Traits Supporting Co-Evolution and Host Adaptation.” Frontiers in Microbiology, vol. 13, no. 804681, May 2022, https://doi.org/10.3389/fmicb.2022.804681.