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https://doi.org/10.21256/zhaw-20382| Publication type: | Article in scientific journal |
| Type of review: | Peer review (publication) |
| Title: | Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis |
| Authors: | Gétaz, Michael Puławska, Joanna Smits, Theo H.M. Pothier, Joël F. |
| et. al: | No |
| DOI: | 10.3390/microorganisms8081253 10.21256/zhaw-20382 |
| Published in: | Microorganisms |
| Volume(Issue): | 8 |
| Issue: | 8 |
| Page(s): | 1253 |
| Issue Date: | 18-Aug-2020 |
| Publisher / Ed. Institution: | MDPI |
| ISSN: | 2076-2607 |
| Language: | English |
| Subjects: | Strawberry; Plant inoculation; Transcriptome; RNA-sequencing; Virulence factor |
| Subject (DDC): | 572: Biochemistry |
| Abstract: | Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in X. fragariae expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. Most X. fragariae genes involved in host interaction, recognition, and pathogenesis were lower expressed at late-phase infection. This study gives a first insight into the interaction of X. fragariae with its host. The strawberry plant changed gene expression in order to consistently adapt its metabolism with the progression of infection. |
| URI: | https://digitalcollection.zhaw.ch/handle/11475/20382 |
| Related research data: | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636 |
| Fulltext version: | Published version |
| License (according to publishing contract): | CC BY 4.0: Attribution 4.0 International |
| Departement: | Life Sciences and Facility Management |
| Organisational Unit: | Institute of Natural Resource Sciences (IUNR) |
| Published as part of the ZHAW project: | DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens |
| Appears in collections: | Publikationen Life Sciences und Facility Management |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| 2020_Getaz-etal_Host-Pathogen-Interactions-Xanthomonas-fragariae-Fragaria-x-ananassa.pdf | Article | 1.36 MB | Adobe PDF |  View/Open |
| 2020_Getaz-etal_Host-Pathogen-Interaction-Xanthomonas-fragariae_Supplementary-materials.pdf | Supplementary Materials | 845.23 kB | Adobe PDF |  View/Open |
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Gétaz, M., Puławska, J., Smits, T. H. M., & Pothier, J. F. (2020). Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis. Microorganisms, 8(8), 1253. https://doi.org/10.3390/microorganisms8081253
Gétaz, M. et al. (2020) ‘Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis’, Microorganisms, 8(8), p. 1253. Available at: https://doi.org/10.3390/microorganisms8081253.
M. Gétaz, J. Puławska, T. H. M. Smits, and J. F. Pothier, “Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis,” Microorganisms, vol. 8, no. 8, p. 1253, Aug. 2020, doi: 10.3390/microorganisms8081253.
GÉTAZ, Michael, Joanna PUŁAWSKA, Theo H.M. SMITS und Joël F. POTHIER, 2020. Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis. Microorganisms. 18 August 2020. Bd. 8, Nr. 8, S. 1253. DOI 10.3390/microorganisms8081253
Gétaz, Michael, Joanna Puławska, Theo H.M. Smits, and Joël F. Pothier. 2020. “Host–Pathogen Interactions between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis.” Microorganisms 8 (8): 1253. https://doi.org/10.3390/microorganisms8081253.
Gétaz, Michael, et al. “Host–Pathogen Interactions between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis.” Microorganisms, vol. 8, no. 8, Aug. 2020, p. 1253, https://doi.org/10.3390/microorganisms8081253.
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