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Issue DateTitleAuthor(s)
2016Engineered phages for efficient control and rapid detection of viable Erwinia amylovora cellsBorn, Yannick; Leimer, Nadja; Thöny, Valentin; Zurfluh, Katrin; Eugster, Marcel; Klumpp, Jochen; Duffy, Brion; Loessner, Martin; Fieseler, Lars
2017-06Engineering of bacteriophages Y2::dpoL1-C and Y2::luxAB for efficient control and rapid detection of the fire blight pathogen, Erwinia amylovoraBorn, Yannick; Fieseler, Lars; Thöny, Valentin; Leimer, Nadja; Duffy, Brion; Loessner, Martin J.
2017-11Erwinia amylovora in the genomics era : from genomes to pathogen virulence, regulation, and disease control strategiesSmits, Theo; Duffy, Brion; Sundin, George; Zhao, Youfu; Rezzonico, Fabio
2013-03Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blightBühlmann, Andreas; Pothier, F.; Rezzonico, Fabio; Smits, Theo H. M.; Andreou, Michael; Boonham, Neil; Duffy, Brion; Frey, Jürg E.
2016-03-01Erwinia gerundensis sp. nov. : a cosmopolitan epiphyte originally isolated from pome fruit treesRezzonico, Fabio; Smits, Theo; Born, Yannick; Blom, Jochen; Frey, Jürg E.; Goesmann, Alexander; Cleenwerck, Ilse; de Vos, Paul; Bonaterra, Anna; Duffy, Brion; Montesinos, Emilio
2017-11Erwinia species identification using matrix-assisted laser desorption ionization-time of flight mass spectrometryRezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.
2015-05Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samplesPalacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.
2016-02-17Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infectionKamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion
2012-07-02Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific levelBühlmann, Andreas; Pothier, Joël F.; Tomlinson, Jennifer A.; Frey, Jürg F.; Boonham, N.; Smits, Theo H.M.; Duffy, Brion
2013-04Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricotSocquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea
2015Implications of the phage depolymerase DpoL1 on Erwinia amylovoraBorn, Yannick; Klumpp, Jochen; Zurfluh, Katrin; Duffy, Brion; Loessner, Martin; Fieseler, Lars
2016Insect pathogenicity in plant-beneficial pseudomonads : phylogenetic distribution and comparative genomicsFlury, Pascale; Aellen, Nora; Ruffner, Beat; Péchy-Tarr, Maria; Fataar, Shakira; Metla, Zane; Dominguez-Ferreras, Ana; Bloemberg, Guido; Frey, Joachim; Goesmann, Alexander; Raaijmakers, Jos M; Duffy, Brion; Höfte, Monica; Blom, Jochen; Smits, Theo; Keel, Christoph; Maurhofer, Monika
2015-06-08Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosisDe Maayer, Pieter; Chan, Wai-Yin; Martin, Douglas A.; Blom, Jochen; Venter, Stephanus N.; Duffy, Brion; Cowan, Don A.; Smits, Theo H. M.; Coutinho, Teresa A.
2016-06Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept studySchneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg
2011Novel virulent and broad-host-range Erwinia amylovora bacteriophages reveal a high degree of mosaicism and a relationship to enterobacteriaceae phagesBorn, Yannick; Fieseler, Lars; Marazzi, Janine; Lurz, Rudi; Duffy, Brion; Loessner, Martin J.
2014Phenotypic comparison of clinical and plant-beneficial strains of Pantoea agglomeransBonaterra, Anna; Badosa, Esther; Rezzonico, Fabio; Duffy, Brion; Montesinos, Emilio
2013-10Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomicsSmits, Theo H. M.; Rezzonico, Fabio; López, Maria M.; Blom, Jochen; Goesmann, Alexander; Frey, Jürg E.; Duffy, Brion
2017Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and TatumellaPalmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P.A.; Chan, Wai-Yin; van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo; Duffy, Brion; Venter, Stephanus N.
2017-09-14Phylogenomic, pan-genomic, pathogenomic and evolutionary genomic insights into the agronomically relevant enterobacteria Pantoea ananatis and Pantoea stewartiiDe Maayer, Pieter; Aliyu, Habibu; Vikram, Surendra; Blom, Jochen; Duffy, Brion; Cowan, Don A.; Smits, Theo H.M.; Venter, Stephanus N.; Coutinho, Teresa A.
2014-07Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellitesBühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion