Issue Date | Title | Involved Person(s) |
6-Nov-2020 | Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform | Maiolo, Massimo; Ulzega, Simone; Gil, Manuel; Anisimova, Maria |
22-Jul-2022 | ARPIP : ancestral sequence reconstruction with insertions and deletions under the poisson indel process | Jowkar, Gholamhossein; Pecerska, Julija; Maiolo, Massimo; Gil, Manuel; Anisimova, Maria |
15-Mar-2022 | Computational literature-based discovery for natural products research : current state and future prospects | Lardos, Andreas; Aghaebrahimian, Ahmad; Koroleva, Anna; Sidorova, Julia; Wolfram, Evelyn, et al |
Sep-2015 | Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference | Tan, Ge; Muffato, Matthieu; Ledergerber, Christian; Herrero, Javier; Goldman, Nick, et al |
2019 | Enabling semantic queries across federated bioinformatics databases | Sima, Ana-Claudia; Mendes de Farias, Tarcisio; Zbinden, Erich; Anisimova, Maria; Gil, Manuel, et al |
2015 | Methodologies for phylogenetic inference | Gil, Manuel; Anisimova, Maria |
2022 | Ontology-aware biomedical relation extraction | Aghaebrahimian, Ahmad; Anisimova, Maria; Gil, Manuel |
2018 | Progressive multiple sequence alignment with indel evolution | Maiolo, Massimo; Zhang, Xiaolei; Gil, Manuel; Anisimova, Maria |
2017 | Progressive multiple sequence alignment with the Poisson Indel Process | Maiolo, Massimo; Zhang, Xiaolei; Gil, Manuel; Anisimova, Maria |
24-Oct-2021 | ProPIP : a tool for progressive multiple sequence alignment with Poisson Indel Process | Maiolo, Massimo; Gatti, Lorenzo; Frei, Diego; Leidi, Tiziano; Gil, Manuel, et al |
6-Jan-2021 | Querying knowledge graphs in natural language | Liang, Shiqi; Stockinger, Kurt; de Farias, Tarcisio Mendes; Anisimova, Maria; Gil, Manuel |
2019 | Semantic integration and enrichment of heterogeneous biological databases | Sima, Ana-Claudia; Stockinger, Kurt; de Farias, Tarcisio Mendes; Gil, Manuel |
2015 | Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks | Tan, Ge; Gil, Manuel; Löytynoja, Ari P.; Goldman, Nick; Dessimoz, Christophe |
2015 | The SIB Swiss Institute of Bioinformatics’ resources : focus on curated databases | Anisimova, Maria; Gatti, Lorenzo; Gil, Manuel; Maiolo, Massimo |
15-Oct-2020 | Towards creating a new triple store for literature-based discovery | Koroleva, Anna; Anisimova, Maria; Gil, Manuel |